VIGGS:GBrowse

Vigan.11G244600.01

Basic Information:

Name:	Vigan.11G244600.01 Multiple alignment Variant Information
Position:	Chr11:36813377..36815092 (+ strand)
Length:	1716

Functional Information:

Description:	Similar to Uncharacterized protein. [I1L4I1, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Biological Process: response to heat (GO:0009408)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Heat shock transcription factor, plant (IPR027709)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:3.31,25.88,5.11,4.62,0.10,3.89,0.89,8.27
Arabidopsis thaliana homolog:	AT3G24520.1

Automatic updates:

Name:	NM_001353431 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat stress transcription factor 16 (HSF-16), mRNA.
PubMed ID:	25416131 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:36813377..36813549 (+ strand)
Length:	173
Type:	five_prime_UTR

Position:	Chr11:36813550..36813774 (+ strand)
Length:	225
Type:	CDS

Position:	Chr11:36814211..36814933 (+ strand)
Length:	723
Type:	CDS

Position:	Chr11:36814934..36815092 (+ strand)
Length:	159
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G244600.01
TCATCCCCAC ACCTCTCTCA CACTTTCTCT CTCTTTCACT CACTCTCACT CTCTGTCACG GACAGAGAAA AACTCAGACA
CCCACGTTCA CACTTCCAAC ACACCATCCC TCCTTGTTTC TTCTTCATCT TCTTCTTCTT GTTCTGTTCC TTATTCTTTT
TTTCCTTCGT GGAATGATGG AACACAACAT CATCAGCAAC ACCAACAACG TGATCGCACC GTTTGTCATA AAAACCTACA
ACATGGTTAA CGATCCCGCC ACCGATAATC TCATCACGTG GGGCCCAGCC AACAACAGTT TCATCGTCCT CGACCCTCTC
GACTTCTCTC ACTCACTCCT CCCTGCTTTC TTCAAGCACA ACAACTTCTC CAGCTTCGTT CGCCAACTCA ACACCTACGG
TTTCAGAAAG GTGGATCCGG ATCGGTGGGA ATTCGCGAAC GAGTGGTTCC TGCGCGGGCA GAAGCATTTG TTGAGGAACA
TCGTGCGGCG GAAGCATGGC GGAGGTAGGA GCAGTAATTT GCATTTGCAT ACCCTGAAGC TGGAAGAGTT GGACGACGGG
GTCATGGTGA TGGAGATAGC GAAGCTGAAG GAGGAGCAGA AGGCGTTGGA GGAAGAGCTT CAAGGAATGA ACAAGAGGTT
AGAGACAACG GAAAAACGAC CGCAGCAAAT GATGGCGTTT CTGTCAAAGG TTGTCGAGGA CCCGCAGGTT CTCTCTCGGA
TTCTCCGAGA AAGAGAAAGA AAACACCTCA GCGAGAAAAA GCGACGCCAA ATTCCTCCGC CTTCGACGGC GGTGACCTCC
TCCTCCTCCT CATCCGGCAT CAAGACGGAG TTCGAAGAGG ACGAGGGTAA CAACATCATG TCTTCATCGC CGGAGACAGG
TTTGGAAATC GATAATAATA ATAATATTTT ATATTCGTCG GCGACGGCGG GGTATTGGGG GGAACAGGGA TGTTATGGGT
ATAATTGCGG CGGAGTAACG ACGCCGTTAA CGGTGGTGAC ACCGGCGGCG CCGGCGATGG GAGGAGGGTA TTTGGGGCGT
GGGAGTTATT TTGGGGAAAT GGCGGCGGAG GGGAGTGCTC TGCCGCCTTA TCCGTTTTCG TTGTTGGAAG GTGGGTTTTA
GATTTAGTTT TTTTAGATTA TGACCTGAAT GAATTATCAC TGCCACAAGA TTTTATCTTG GATTCTGTCT TTTGTTTTGA
AAGTTCTATC CTTCTGCGTC GATTCTGTGT AAAGAAAAGG GAAAAAGAAA AAGGAGAAAA AGATTTATTT TTGTTAGATA

[show][hide][copy]CDS

>Vigan.11G244600.01
ATGATGGAAC ACAACATCAT CAGCAACACC AACAACGTGA TCGCACCGTT TGTCATAAAA ACCTACAACA TGGTTAACGA
TCCCGCCACC GATAATCTCA TCACGTGGGG CCCAGCCAAC AACAGTTTCA TCGTCCTCGA CCCTCTCGAC TTCTCTCACT
CACTCCTCCC TGCTTTCTTC AAGCACAACA ACTTCTCCAG CTTCGTTCGC CAACTCAACA CCTACGGTTT CAGAAAGGTG
GATCCGGATC GGTGGGAATT CGCGAACGAG TGGTTCCTGC GCGGGCAGAA GCATTTGTTG AGGAACATCG TGCGGCGGAA
GCATGGCGGA GGTAGGAGCA GTAATTTGCA TTTGCATACC CTGAAGCTGG AAGAGTTGGA CGACGGGGTC ATGGTGATGG
AGATAGCGAA GCTGAAGGAG GAGCAGAAGG CGTTGGAGGA AGAGCTTCAA GGAATGAACA AGAGGTTAGA GACAACGGAA
AAACGACCGC AGCAAATGAT GGCGTTTCTG TCAAAGGTTG TCGAGGACCC GCAGGTTCTC TCTCGGATTC TCCGAGAAAG
AGAAAGAAAA CACCTCAGCG AGAAAAAGCG ACGCCAAATT CCTCCGCCTT CGACGGCGGT GACCTCCTCC TCCTCCTCAT
CCGGCATCAA GACGGAGTTC GAAGAGGACG AGGGTAACAA CATCATGTCT TCATCGCCGG AGACAGGTTT GGAAATCGAT
AATAATAATA ATATTTTATA TTCGTCGGCG ACGGCGGGGT ATTGGGGGGA ACAGGGATGT TATGGGTATA ATTGCGGCGG
AGTAACGACG CCGTTAACGG TGGTGACACC GGCGGCGCCG GCGATGGGAG GAGGGTATTT GGGGCGTGGG AGTTATTTTG
GGGAAATGGC GGCGGAGGGG AGTGCTCTGC CGCCTTATCC GTTTTCGTTG TTGGAAGGTG GGTTTTAG

[show][hide][copy]PROTEIN

>Vigan.11G244600.01
MMEHNIISNT NNVIAPFVIK TYNMVNDPAT DNLITWGPAN NSFIVLDPLD FSHSLLPAFF KHNNFSSFVR QLNTYGFRKV
DPDRWEFANE WFLRGQKHLL RNIVRRKHGG GRSSNLHLHT LKLEELDDGV MVMEIAKLKE EQKALEEELQ GMNKRLETTE
KRPQQMMAFL SKVVEDPQVL SRILRERERK HLSEKKRRQI PPPSTAVTSS SSSSGIKTEF EEDEGNNIMS SSPETGLEID
NNNNILYSSA TAGYWGEQGC YGYNCGGVTT PLTVVTPAAP AMGGGYLGRG SYFGEMAAEG SALPPYPFSL LEGGF*