GBrowse Details

Vigan.11G245300.01

Basic Information:
Name: Vigan.11G245300.01
Multiple alignment
Variant Information
Position: Chr11:36877773..36881945 (- strand)
Length: 4173
Functional Information:
Description: Similar to Os08g0387500 protein. [Q0J5Y7, Oryza sativa subsp. japonica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.83,4.05,5.58,34.43,3.92,7.70,6.05,6.22
Arabidopsis thaliana homolog: AT5G19540.1
Automatic updates:
Name: NM_001255151 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100795956 (LOC100795956), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:36877773..36877944 (- strand)
Length: 172
Type: three_prime_UTR
Position: Chr11:36877945..36878386 (- strand)
Length: 442
Type: CDS
Position: Chr11:36878811..36879097 (- strand)
Length: 287
Type: CDS
Position: Chr11:36879548..36879818 (- strand)
Length: 271
Type: CDS
Position: Chr11:36881311..36881348 (- strand)
Length: 38
Type: CDS
Position: Chr11:36881442..36881804 (- strand)
Length: 363
Type: CDS
Position: Chr11:36881805..36881945 (- strand)
Length: 141
Type: five_prime_UTR


>Vigan.11G245300.01
CTAGCGGTGA GTGTAAGTGG TAACTGCAAT AACTGAACAG CACGGTGGGT TTTTCGGTGA CTGAAAAACC AAATCCTATA
TTTCTCTGGT TATCCAAACA CTTCTCTATG TGGTTGTGTT GCAGAGCATA GAAGAAGAAA AATGGTGTTA GCTTCAATTT
CAATTGTATC TTCTTCATCT TCATTCCTCT CTGATTCTCC TTCCACTTCC GCTTCCACCA AAACCAGACC TTTCCTCTTC
CCTTCCTCAA ACCGAACCTC TCTTTTCGGC TTCCCCAGAG CACCCCTTCC CAATGCTACC ATCAGAGCCT CATCACCCTC
TTCTTCTTCC GCTTTCACAC CGCAGGAAAA TGGGACGCCG GAGCAGTTCC TCGAGAACAA TTCCATCGCC GATTTCATGC
GGTTCAAAAG CGGCGTCGAA GGTGGTGGCA GTTCCGAGTT GCAGACGGCT CTTGTCAGCT ACAGGAAGAG GTTTCCTTGG
TCCCTTTTGA GCCCTTTTCT TCAGGTTGAC TTGGTTTCGA CAATTCACAT CGCCGATGAA GAGTATTTTC TGGCCCTTCA
GAAGGAACTT GAAAGCTATG ATTGTGTCCT TTTTGAAATG GTAGCGAGCA GAGAAAGTTT AGAGAGTAGA AGAAACGCTA
CTGCTACAAA AAGGTTAAAA AGTTCACGCT CAAAGGGTTT TAACATTTTG GGATGCATCC AGAGACAGAT GGCTCAAATT
CTTACACTTG ATTTCCAGTT AGATTGTCTC AACTACCAGT CTTCAAATTG GTACCATGCA GATCTTGATT ACGAGACCTT
TAAATTACTT CAGCTTGAAA AAGGTGAAAG CTTCTTCTCC TTTGCAAAAG ATATGACTCT TAGGTCTACA AAGGCAGTAT
TACAGCCAGC TTCAATTCCG GAAGATCTTG ACCCTTTGAG ATCCAAGCTA TTATGGGCTT CACGTGTACT TCCTATGCCA
CTTGTTGGCC TTCTTATCAT TGGAGGTGTT TGTACAGATG TGGGAAGTCA AGCATCAGAA TATCCCGAAA TTGAGGCACT
GTCAAGGCTT GATTTTGGTG CTGCAATGAA GGTCTTCCTT GCAAAGAGAC TAACATCTGA GTTCACTCTG GTGACAGCAG
ATGTAGAGGA GAAATCAGTT ATAATTGGTG AGAGAAATAG AGTAGCAACA GAAGCCCTAA AAGCAGCAAT AGACAAAGGA
CACAATAGAA TTGCAATACT TTATGGGGGT GGCCACATGC CAGATCTTGG GAGGAGACTA AGAGAGGAGT TTGATTTAGT
CCCATCTAAT GTGAAGTGGA TAACAGCTTG GTCCATAAGG AAAAGGGACC TAAATACTAA TTCATTTCCA TTTCTGAAGA
AGATTGCTAA GGCCTCAGGC TGGCCATTGA ACCGCTATCA GACATTGGCA TTGCTCATCT TTTCATCAGT CTTGGCATTG
GATCTGTGGT TCTGGGAGCT ATTCTTTGGC ACTGCAGTCA ATTGGGTCTC TGAACTTGGC TCAGAACTTG TTCAGTATGT
TGGTAATTCA CCAATGATAT GATCATTGGA CTCAGAAAAT ACATACTAAT TGCTAAATAG GATGAAAAAA TTTGTATGTG
CCACTGTAAA TACGAAAAGC TTTATTTTTA TTACAGATAT TAAATTCTAG CTGTTCCCAT TTCTCAAAGT GTTAAAATAT
ACAATTGTTT GCATTCAATA TACTTTAACA GGTA

>Vigan.11G245300.01
ATGGTGTTAG CTTCAATTTC AATTGTATCT TCTTCATCTT CATTCCTCTC TGATTCTCCT TCCACTTCCG CTTCCACCAA
AACCAGACCT TTCCTCTTCC CTTCCTCAAA CCGAACCTCT CTTTTCGGCT TCCCCAGAGC ACCCCTTCCC AATGCTACCA
TCAGAGCCTC ATCACCCTCT TCTTCTTCCG CTTTCACACC GCAGGAAAAT GGGACGCCGG AGCAGTTCCT CGAGAACAAT
TCCATCGCCG ATTTCATGCG GTTCAAAAGC GGCGTCGAAG GTGGTGGCAG TTCCGAGTTG CAGACGGCTC TTGTCAGCTA
CAGGAAGAGG TTTCCTTGGT CCCTTTTGAG CCCTTTTCTT CAGGTTGACT TGGTTTCGAC AATTCACATC GCCGATGAAG
AGTATTTTCT GGCCCTTCAG AAGGAACTTG AAAGCTATGA TTGTGTCCTT TTTGAAATGG TAGCGAGCAG AGAAAGTTTA
GAGAGTAGAA GAAACGCTAC TGCTACAAAA AGGTTAAAAA GTTCACGCTC AAAGGGTTTT AACATTTTGG GATGCATCCA
GAGACAGATG GCTCAAATTC TTACACTTGA TTTCCAGTTA GATTGTCTCA ACTACCAGTC TTCAAATTGG TACCATGCAG
ATCTTGATTA CGAGACCTTT AAATTACTTC AGCTTGAAAA AGGTGAAAGC TTCTTCTCCT TTGCAAAAGA TATGACTCTT
AGGTCTACAA AGGCAGTATT ACAGCCAGCT TCAATTCCGG AAGATCTTGA CCCTTTGAGA TCCAAGCTAT TATGGGCTTC
ACGTGTACTT CCTATGCCAC TTGTTGGCCT TCTTATCATT GGAGGTGTTT GTACAGATGT GGGAAGTCAA GCATCAGAAT
ATCCCGAAAT TGAGGCACTG TCAAGGCTTG ATTTTGGTGC TGCAATGAAG GTCTTCCTTG CAAAGAGACT AACATCTGAG
TTCACTCTGG TGACAGCAGA TGTAGAGGAG AAATCAGTTA TAATTGGTGA GAGAAATAGA GTAGCAACAG AAGCCCTAAA
AGCAGCAATA GACAAAGGAC ACAATAGAAT TGCAATACTT TATGGGGGTG GCCACATGCC AGATCTTGGG AGGAGACTAA
GAGAGGAGTT TGATTTAGTC CCATCTAATG TGAAGTGGAT AACAGCTTGG TCCATAAGGA AAAGGGACCT AAATACTAAT
TCATTTCCAT TTCTGAAGAA GATTGCTAAG GCCTCAGGCT GGCCATTGAA CCGCTATCAG ACATTGGCAT TGCTCATCTT
TTCATCAGTC TTGGCATTGG ATCTGTGGTT CTGGGAGCTA TTCTTTGGCA CTGCAGTCAA TTGGGTCTCT GAACTTGGCT
CAGAACTTGT TCAGTATGTT GGTAATTCAC CAATGATATG A

>Vigan.11G245300.01
MVLASISIVS SSSSFLSDSP STSASTKTRP FLFPSSNRTS LFGFPRAPLP NATIRASSPS SSSAFTPQEN GTPEQFLENN
SIADFMRFKS GVEGGGSSEL QTALVSYRKR FPWSLLSPFL QVDLVSTIHI ADEEYFLALQ KELESYDCVL FEMVASRESL
ESRRNATATK RLKSSRSKGF NILGCIQRQM AQILTLDFQL DCLNYQSSNW YHADLDYETF KLLQLEKGES FFSFAKDMTL
RSTKAVLQPA SIPEDLDPLR SKLLWASRVL PMPLVGLLII GGVCTDVGSQ ASEYPEIEAL SRLDFGAAMK VFLAKRLTSE
FTLVTADVEE KSVIIGERNR VATEALKAAI DKGHNRIAIL YGGGHMPDLG RRLREEFDLV PSNVKWITAW SIRKRDLNTN
SFPFLKKIAK ASGWPLNRYQ TLALLIFSSV LALDLWFWEL FFGTAVNWVS ELGSELVQYV GNSPMI*