GBrowse Details

Vigan.11G245500.01

Basic Information:
Name: Vigan.11G245500.01
Multiple alignment
Variant Information
Position: Chr11:36892589..36896573 (+ strand)
Length: 3985
Functional Information:
Description: Similar to Uncharacterized protein. [I1KIQ4, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:82.33,23.59,74.04,55.01,5.60,18.66,7.59,9.45
Arabidopsis thaliana homolog: AT4G13250.1
Automatic updates:
Name: NM_001358908 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein NON-YELLOW COLORING 1 (NYC1_1), mRNA.
PubMed ID: 26829931 NCBI(pubmed)
24372721 NCBI(pubmed)
Status: Known Variant
Name: NM_001358943 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein NON-YELLOW COLORING 1 (NYC1_2), mRNA.
PubMed ID: 24372721 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:36892589..36892769 (+ strand)
Length: 181
Type: five_prime_UTR
Position: Chr11:36892770..36893117 (+ strand)
Length: 348
Type: CDS
Position: Chr11:36893245..36893323 (+ strand)
Length: 79
Type: CDS
Position: Chr11:36893410..36893545 (+ strand)
Length: 136
Type: CDS
Position: Chr11:36893799..36893873 (+ strand)
Length: 75
Type: CDS
Position: Chr11:36893990..36894185 (+ strand)
Length: 196
Type: CDS
Position: Chr11:36894700..36894768 (+ strand)
Length: 69
Type: CDS
Position: Chr11:36894907..36895046 (+ strand)
Length: 140
Type: CDS
Position: Chr11:36895205..36895327 (+ strand)
Length: 123
Type: CDS
Position: Chr11:36895594..36895786 (+ strand)
Length: 193
Type: CDS
Position: Chr11:36895975..36896160 (+ strand)
Length: 186
Type: CDS
Position: Chr11:36896161..36896573 (+ strand)
Length: 413
Type: three_prime_UTR


>Vigan.11G245500.01
TCTAGTTACA TTTCCTTCGA TCTAGCTTCG TCTGATATTT TTCTCCACCA GCAAGCTTAC AAAAACTTAG TTTTCAGTTT
TCACCAAAAA GATAACAATA AATAAAGCCA CATCGTATAC AGCACTTCTC ACTATCCATT TTCATGAACT TTGCATCTTC
AGATATTCTA TCACCACATC CATGGCGGCA GTTGTGAAGC TTCACGTTTT CCCGGATAGT TTGAACAGGC CCAAAACAAG
GTTTTTCAGG AGGGGTTTTG GCTCGTGCCC TTCTCCCGGG GTGCTTGGTT TTGGCCATGA TTGTGATCGG TTCTCTGTGA
GAGAGTGCAG GGCCTTCAGG ACTGAAGATG GTGGGGATGC GAAGGAGAAA AAGTCTCGAA ATTTGAAGAA AAGTGAAGTG
AATTCCAAAA GGGAAAGTGG GTTTTGGAGT TCCCTCCAGT CTATCTTGTT GAGGAATTTC ATGGTGGGTT CAAAATCAGA
CGATGAGTAT CGCCAAGCTG TGGTGAAGGT GGAGGGTCTG CTATCCTCGA TTGCCATTCA AATTGGAAGG TATATTGTGA
CCATGATGAG CACTGGGGTC ATCCTTTCGA TCGGATTTCA GATGTCAGGT GGAGACAGTC AAATGGATGC ATTGATTTGG
TACAGTTGGC TAGGAGGAGT GATCATTGGA ACAATGATAG GTGCTAACAT GGTGCTGGAG GAACATTGTC GTGCTGGTCC
GCGTAATGTT GTCATAACAG GGAGTACAAG GGGATTGGGG AAAGCCTTAG CTCGAGAGTT TCTTCTTTCT GGAGATCGTG
TGATTGTTAC CTCTCGAAGC CTCGAGTCTG TGCAAGCAAC TGTTAAAGAG CTTGAGGAAA ATCTGAAGGA AGGCATTGCC
AATTCAGTTG GTTCATCACT GACAAAACTT TCTCATGCAA AGGTGGTAGG CATTGCTTGT GATGTTTGTG AGCCTCATGA
TGTGCAGAGA TTGGCAGCCT TTGCTGTCAA AGAACTTGGT TATGTTGACA TTTGGATAAA TAACGCCGGA ACAAATAAAG
GTTTTAGACC ATTGCTTCAG TTTAGTGACG AAGATATTAA ACAGATTGTC TCAACAAATT TGGTTGGATC TATTCTTTGT
ACACGAGAAG CCATGCGTGT GATGAGAAAC CAAGCCAATG CAGGTCACAT ATTTAACATG GATGGTGCCG GTTCTGGAGG
CTCCAGCACC CCTTTGACTG CTGTATATGG TTCTACAAAG TGTGGCCTCA GGCAACTTCA GGGATCACTT TTAAAGGAGT
GCAAGCGATC CAAAGTAGGT GTCCATACTG CATCTCCAGG CATGGTTCTT ACAGATCTGC TTTTAAGTGG TTCAACTGTC
CAAAACAGGC AGATGTTTAA CATCATCTGT GAGCTTCCAG AAACTGTTGC TAGAACATTA GTTCCACGAA TGCGGGTTGT
CAAGGGAACA GGCAAAGCCA TCAATTACTT GACCCCTCCC AGAATCTTAC TCGCTTTGGT CACTGCCTGG TTACGGCGAG
GTCGCTGGTT TGATGATCAG GGAAGAGCAT TGTATGCAGC CGAAGCAGAC CGATTGCGTA ATTGGGCCGA AGATCGGGCC
CGGTTTTCTT TCACAGATGC AATGGAAATG TACACAGAGA ACACCTGGTT ATCAGTCTTC TCACTTTCAG TTGTGTGTGC
CTTCATAATT CTTTCCAGCA CAGGCAACAA TATGCCTGGC ACATGATGTC TTGCTGCCAA TGCAAAAAAG TGCATCTGCA
TTCCGTGGAC AGGCAATTGG TGCCTGAAAA ATCATCAAGA CAACAACATA GTGAAACTAA ATCTAAATCA TAAACAAAGT
GGATCTGTGT TTTTTTCCAC CATGTCCACC CAAAACAGTT ATATCATTTG ACACACTCAG TTGTCTATAG CTCTGTGTAT
AGGCTTCTCT GCAATCGGCA TTCATCATTG AGTTGCTTGT AGTCATAGTA TGTTACCATG TATAACCTTC ATTGAATTGT
AGACTGTAGT GAAATCTCAT ATTTTCTACC CCATATATTT ATTTGAATCT ATGTTTACTT ATATTGGACA TCACTTTGGT
TAATGCTACA TAGATTTTTT TGTACCATGT TGTGTTGTTT CAATACCAGT TCCTTCTGT

>Vigan.11G245500.01
ATGGCGGCAG TTGTGAAGCT TCACGTTTTC CCGGATAGTT TGAACAGGCC CAAAACAAGG TTTTTCAGGA GGGGTTTTGG
CTCGTGCCCT TCTCCCGGGG TGCTTGGTTT TGGCCATGAT TGTGATCGGT TCTCTGTGAG AGAGTGCAGG GCCTTCAGGA
CTGAAGATGG TGGGGATGCG AAGGAGAAAA AGTCTCGAAA TTTGAAGAAA AGTGAAGTGA ATTCCAAAAG GGAAAGTGGG
TTTTGGAGTT CCCTCCAGTC TATCTTGTTG AGGAATTTCA TGGTGGGTTC AAAATCAGAC GATGAGTATC GCCAAGCTGT
GGTGAAGGTG GAGGGTCTGC TATCCTCGAT TGCCATTCAA ATTGGAAGGT ATATTGTGAC CATGATGAGC ACTGGGGTCA
TCCTTTCGAT CGGATTTCAG ATGTCAGGTG GAGACAGTCA AATGGATGCA TTGATTTGGT ACAGTTGGCT AGGAGGAGTG
ATCATTGGAA CAATGATAGG TGCTAACATG GTGCTGGAGG AACATTGTCG TGCTGGTCCG CGTAATGTTG TCATAACAGG
GAGTACAAGG GGATTGGGGA AAGCCTTAGC TCGAGAGTTT CTTCTTTCTG GAGATCGTGT GATTGTTACC TCTCGAAGCC
TCGAGTCTGT GCAAGCAACT GTTAAAGAGC TTGAGGAAAA TCTGAAGGAA GGCATTGCCA ATTCAGTTGG TTCATCACTG
ACAAAACTTT CTCATGCAAA GGTGGTAGGC ATTGCTTGTG ATGTTTGTGA GCCTCATGAT GTGCAGAGAT TGGCAGCCTT
TGCTGTCAAA GAACTTGGTT ATGTTGACAT TTGGATAAAT AACGCCGGAA CAAATAAAGG TTTTAGACCA TTGCTTCAGT
TTAGTGACGA AGATATTAAA CAGATTGTCT CAACAAATTT GGTTGGATCT ATTCTTTGTA CACGAGAAGC CATGCGTGTG
ATGAGAAACC AAGCCAATGC AGGTCACATA TTTAACATGG ATGGTGCCGG TTCTGGAGGC TCCAGCACCC CTTTGACTGC
TGTATATGGT TCTACAAAGT GTGGCCTCAG GCAACTTCAG GGATCACTTT TAAAGGAGTG CAAGCGATCC AAAGTAGGTG
TCCATACTGC ATCTCCAGGC ATGGTTCTTA CAGATCTGCT TTTAAGTGGT TCAACTGTCC AAAACAGGCA GATGTTTAAC
ATCATCTGTG AGCTTCCAGA AACTGTTGCT AGAACATTAG TTCCACGAAT GCGGGTTGTC AAGGGAACAG GCAAAGCCAT
CAATTACTTG ACCCCTCCCA GAATCTTACT CGCTTTGGTC ACTGCCTGGT TACGGCGAGG TCGCTGGTTT GATGATCAGG
GAAGAGCATT GTATGCAGCC GAAGCAGACC GATTGCGTAA TTGGGCCGAA GATCGGGCCC GGTTTTCTTT CACAGATGCA
ATGGAAATGT ACACAGAGAA CACCTGGTTA TCAGTCTTCT CACTTTCAGT TGTGTGTGCC TTCATAATTC TTTCCAGCAC
AGGCAACAAT ATGCCTGGCA CATGA

>Vigan.11G245500.01
MAAVVKLHVF PDSLNRPKTR FFRRGFGSCP SPGVLGFGHD CDRFSVRECR AFRTEDGGDA KEKKSRNLKK SEVNSKRESG
FWSSLQSILL RNFMVGSKSD DEYRQAVVKV EGLLSSIAIQ IGRYIVTMMS TGVILSIGFQ MSGGDSQMDA LIWYSWLGGV
IIGTMIGANM VLEEHCRAGP RNVVITGSTR GLGKALAREF LLSGDRVIVT SRSLESVQAT VKELEENLKE GIANSVGSSL
TKLSHAKVVG IACDVCEPHD VQRLAAFAVK ELGYVDIWIN NAGTNKGFRP LLQFSDEDIK QIVSTNLVGS ILCTREAMRV
MRNQANAGHI FNMDGAGSGG SSTPLTAVYG STKCGLRQLQ GSLLKECKRS KVGVHTASPG MVLTDLLLSG STVQNRQMFN
IICELPETVA RTLVPRMRVV KGTGKAINYL TPPRILLALV TAWLRRGRWF DDQGRALYAA EADRLRNWAE DRARFSFTDA
MEMYTENTWL SVFSLSVVCA FIILSSTGNN MPGT*