GBrowse Details

Vigan.11G246600.01

Basic Information:
Name: Vigan.11G246600.01
Multiple alignment
Variant Information
Position: Chr11:36980694..36984680 (- strand)
Length: 3987
Functional Information:
Description: Similar to Uncharacterized protein. [V7CEE3, Phaseolus vulgaris]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Sec20 (IPR005606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,1.97,12.26,2.84,20.36,10.37,14.61,15.00
Arabidopsis thaliana homolog: AT2G35190.1
Automatic updates:
Name: NM_001319728 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max novel plant SNARE 11-like (LOC100796579), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:36980694..36981171 (- strand)
Length: 478
Type: three_prime_UTR
Position: Chr11:36981172..36981261 (- strand)
Length: 90
Type: CDS
Position: Chr11:36981875..36981949 (- strand)
Length: 75
Type: CDS
Position: Chr11:36982077..36982169 (- strand)
Length: 93
Type: CDS
Position: Chr11:36982258..36982314 (- strand)
Length: 57
Type: CDS
Position: Chr11:36983087..36983166 (- strand)
Length: 80
Type: CDS
Position: Chr11:36983438..36983526 (- strand)
Length: 89
Type: CDS
Position: Chr11:36983679..36983716 (- strand)
Length: 38
Type: CDS
Position: Chr11:36983835..36983928 (- strand)
Length: 94
Type: CDS
Position: Chr11:36984240..36984332 (- strand)
Length: 93
Type: CDS
Position: Chr11:36984418..36984494 (- strand)
Length: 77
Type: CDS
Position: Chr11:36984495..36984680 (- strand)
Length: 186
Type: five_prime_UTR


>Vigan.11G246600.01
AGAAAACCCC AATAATTTTT GTTTGTTCCT TGAAAGTAAA AGGGACGAAC ATACACTGAA GATCCCGTCC CAACCGCACA
ACGCGCTGTT TGGGAGCAAC GCGAAATCTG ACCCGCATTC CTCGTTTCCT CTCACTCCTA AAGGCCTCAT CCAAACAGCC
CTCTCTGCCT CAGATCTCGC TGCGAGATGG ATCAGTTGTC GGCGATCAGC GAGGACCTGG CCGAGATCGA GGGGCAAATC
GCCGACAATT TCCGCGCCCT ATCAAATGGA TTTCAGAAGT TGGAGAAGAT TAAGGATTCG AATAGACAGA GCAGGCAGTT
GGAAGAGCTC ACGGAGAAAA TGCGAGAATG TAAACGGCTT ATCAAGGAGT TCGATAAAGA AGTCAAAGCT TTGGAGAATA
ACTTCGACAG AGAAACTAAC AAAATGTTGA ATGAGAAAAA GCAGTCAATG ATCAAAGAGT TAAACTCATA TGTTGCTTTA
AAAAAGAAGT ATGCTACAAA TATTGAGCAT AAACGAATTG AACTCTTTGA GGGGCCAAAT GAAGGTTTTG CTGAAGAAAA
TGGCTTGCTA GCATCCTCAA TGACTAACGA ACAACTAATG GATCATGGGA ATAGGATGAT GGATGAGACA GATCAGGCCA
TTGAAAGGGG AAAGAAGGTC GTTCAAGAAA CAATAAATGT TGGTACAGAG ACTGCAGCAG CTCTTAAGGC TCAGACGGAA
CAAATGAGCA GAGTTGTCAA TGAGCTGGAT TCGATCCATT TCTCTTTAAA GAAAGCATCA CAATTGGTCA AGGAAATCGG
TAGGCAGGTT GCTACTGACA AGTGTATTAT GATGCTACTT TTCCTTATTG TCATTGGAGT AATTGCTATC ATTATAGTAA
AGCTTGTGCA CCCGGAGAAC AAGGACATTC GCGACATTCC AGGACTGGCT CCTCCAGTTC AGAACCGAAG ACTGCTTTGG
AGTCACAGTT GAAGAGTTAA AATGAACATG ATGATGACTG ATAAGCTTAC GACAAATGCG TTGGGGACAC TAAAATGATC
ATGTTTATGA CCTCACCAAA TTGATTTGAT GGTTATGACA TTGGATGAAG GTATTACCAG AAACGCAGTT GCCATTAATT
GAGTTTGTTA TTACATAATA TTAGAAGAGG GTTGGTTGGC CTGAGGCATA ATAGAACGTG GGTCTAGGAA TGCACGCTGA
ACTTTTTCTT GAACCGAACC ATTTTTACTA CTATACAGGT TCTGTCTATG GAATCATAGG GAAAGCCAAA CAAATGGGCC
CTTGAGATTC TTTGCTGGTT GTCTTTCTGT CAATCGTGTA ATGTACGGTG CCATTTACTG TATACCTTCA CTTCTAAAAA
ACCTACCTAG TATTATCAAT TTATAATATA AGCACTACTT TATCATGTTT AAATCTTGCA AGTCCTTTGT TTTGTTTTAA
TCGATGTCCA 

>Vigan.11G246600.01
ATGGATCAGT TGTCGGCGAT CAGCGAGGAC CTGGCCGAGA TCGAGGGGCA AATCGCCGAC AATTTCCGCG CCCTATCAAA
TGGATTTCAG AAGTTGGAGA AGATTAAGGA TTCGAATAGA CAGAGCAGGC AGTTGGAAGA GCTCACGGAG AAAATGCGAG
AATGTAAACG GCTTATCAAG GAGTTCGATA AAGAAGTCAA AGCTTTGGAG AATAACTTCG ACAGAGAAAC TAACAAAATG
TTGAATGAGA AAAAGCAGTC AATGATCAAA GAGTTAAACT CATATGTTGC TTTAAAAAAG AAGTATGCTA CAAATATTGA
GCATAAACGA ATTGAACTCT TTGAGGGGCC AAATGAAGGT TTTGCTGAAG AAAATGGCTT GCTAGCATCC TCAATGACTA
ACGAACAACT AATGGATCAT GGGAATAGGA TGATGGATGA GACAGATCAG GCCATTGAAA GGGGAAAGAA GGTCGTTCAA
GAAACAATAA ATGTTGGTAC AGAGACTGCA GCAGCTCTTA AGGCTCAGAC GGAACAAATG AGCAGAGTTG TCAATGAGCT
GGATTCGATC CATTTCTCTT TAAAGAAAGC ATCACAATTG GTCAAGGAAA TCGGTAGGCA GGTTGCTACT GACAAGTGTA
TTATGATGCT ACTTTTCCTT ATTGTCATTG GAGTAATTGC TATCATTATA GTAAAGCTTG TGCACCCGGA GAACAAGGAC
ATTCGCGACA TTCCAGGACT GGCTCCTCCA GTTCAGAACC GAAGACTGCT TTGGAGTCAC AGTTGA

>Vigan.11G246600.01
MDQLSAISED LAEIEGQIAD NFRALSNGFQ KLEKIKDSNR QSRQLEELTE KMRECKRLIK EFDKEVKALE NNFDRETNKM
LNEKKQSMIK ELNSYVALKK KYATNIEHKR IELFEGPNEG FAEENGLLAS SMTNEQLMDH GNRMMDETDQ AIERGKKVVQ
ETINVGTETA AALKAQTEQM SRVVNELDSI HFSLKKASQL VKEIGRQVAT DKCIMMLLFL IVIGVIAIII VKLVHPENKD
IRDIPGLAPP VQNRRLLWSH S*