GBrowse Details

Vigan.11G247400.01

Basic Information:
Name: Vigan.11G247400.01
Multiple alignment
Variant Information
Position: Chr11:37040394..37044170 (+ strand)
Length: 3777
Functional Information:
Description: Similar to Continuous vascular ring family protein. [B9ILN4, Populus trichocarpa]
InterPro: Protein of unknown function DUF502 (IPR007462)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:58.74,27.91,15.38,20.68,16.37,16.75,18.80,16.57
Arabidopsis thaliana homolog: AT2G20120.1
Automatic updates:
Name: NM_001251314 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305375 (LOC100305375), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37040394..37040579 (+ strand)
Length: 186
Type: five_prime_UTR
Position: Chr11:37040580..37040726 (+ strand)
Length: 147
Type: CDS
Position: Chr11:37041236..37041288 (+ strand)
Length: 53
Type: CDS
Position: Chr11:37042016..37042125 (+ strand)
Length: 110
Type: CDS
Position: Chr11:37042462..37042629 (+ strand)
Length: 168
Type: CDS
Position: Chr11:37042717..37042814 (+ strand)
Length: 98
Type: CDS
Position: Chr11:37043156..37043282 (+ strand)
Length: 127
Type: CDS
Position: Chr11:37043833..37043930 (+ strand)
Length: 98
Type: CDS
Position: Chr11:37043931..37044170 (+ strand)
Length: 240
Type: three_prime_UTR


>Vigan.11G247400.01
TTCAAAGACA GATAGAATTA AAATATATTT TAGGAAAATA AAATTATAAT AGAAAAATTA GAAAAGGAAG CGAAGACCAA
ATGTGAATTA CAGCTTTGGA CTCTCCGAAG AACGCAAGGA AGAACGGAGA GTTTCAGAAA CTTCAGAAAG GTTTTTGCGT
TTTGAGTTAC CAAACGCCGT CGTTTAATGG GCGATGACAA ATCCTCCATG GCCATCACCA CTAGAGACAG AGATCGAGAG
CTTCTCATAC CCGTCGCCGA CACCGCCGTC CCCGCCGCCT CACTTTCCCC CAAGCCACCC TCGTCGTCGT CCGCGCATCA
TGCTGGACGC GAGACTTTTT TCAAAGTTAT TAGAAGCTGG GCATCAAAAA AGTTCATGAC AGGATGTGTC ATTCTCTTTC
CAATTGCTAT CACCTTCTAT ATAACATGGT GGTTCATTCA TTTTGTGGAT GGATTTTTCT CTCCTATCTA TGCTCAACTT
GGAATTGATA TTTTTGGTCT TGGTTTCATA ACTTCCATAA CTTTCATCTT CTTGGTTGGG GTTTTCATGT CATCATGGTT
GGGTGCATCT GTCCTGGGCC TTGGGGAGTG GTTTATCAAG CGAATGCCAC TTGTTCGTCA TATTTATAAT GCCTCCAAGC
AGATCAGTGC TGCTATCTCT CCAGATCAAA ATACACAAGC CTTCAAAGAA GTAGCTATCA TACGGCATCC ACGTATTGGA
GAATATGCAT TTGGATTCAT CACCTCATCT GTTACTCTTC AGAACTATTC TGGGGACGAG GAGTTATACT GTGTCTATGT
TCCTACAAAT CATCTCTATA TCGGTGATAT ATTTCTAGTC AACAGCAAAG ATGTCATTAG GCCAAACTTA TCAGTTCGAG
AAGGAATTGA AATTGTTGTT TCGGGAGGCA TGTCAATGCC ACAGATCCTA TCAACGGTAG ATTCACGCAT CATACCAGGG
GAGATAAGTA GAATCAACAG AAGCTGAGAG TTAAGAGCAG GGTAGTTATT CATGTTTCTG TTCCTTGGTG TCATATGAAG
CCATCAGAAT GACAATCCAA TCATTGTGTT GCGGATGCAG TATTGAATTT ACGTGATTGA TTGCTGAGAA AGTGAGACTC
TGATGGCTTG TGTAACATTG GTTTGTGTAA GAATGTAGAG TTTAGCATTT ATTTGACAAC CATACAAAAT TCTAGTGTGC
TTGGATTCTC GGATTTTTAC CTGTGTA

>Vigan.11G247400.01
ATGGGCGATG ACAAATCCTC CATGGCCATC ACCACTAGAG ACAGAGATCG AGAGCTTCTC ATACCCGTCG CCGACACCGC
CGTCCCCGCC GCCTCACTTT CCCCCAAGCC ACCCTCGTCG TCGTCCGCGC ATCATGCTGG ACGCGAGACT TTTTTCAAAG
TTATTAGAAG CTGGGCATCA AAAAAGTTCA TGACAGGATG TGTCATTCTC TTTCCAATTG CTATCACCTT CTATATAACA
TGGTGGTTCA TTCATTTTGT GGATGGATTT TTCTCTCCTA TCTATGCTCA ACTTGGAATT GATATTTTTG GTCTTGGTTT
CATAACTTCC ATAACTTTCA TCTTCTTGGT TGGGGTTTTC ATGTCATCAT GGTTGGGTGC ATCTGTCCTG GGCCTTGGGG
AGTGGTTTAT CAAGCGAATG CCACTTGTTC GTCATATTTA TAATGCCTCC AAGCAGATCA GTGCTGCTAT CTCTCCAGAT
CAAAATACAC AAGCCTTCAA AGAAGTAGCT ATCATACGGC ATCCACGTAT TGGAGAATAT GCATTTGGAT TCATCACCTC
ATCTGTTACT CTTCAGAACT ATTCTGGGGA CGAGGAGTTA TACTGTGTCT ATGTTCCTAC AAATCATCTC TATATCGGTG
ATATATTTCT AGTCAACAGC AAAGATGTCA TTAGGCCAAA CTTATCAGTT CGAGAAGGAA TTGAAATTGT TGTTTCGGGA
GGCATGTCAA TGCCACAGAT CCTATCAACG GTAGATTCAC GCATCATACC AGGGGAGATA AGTAGAATCA ACAGAAGCTG
A

>Vigan.11G247400.01
MGDDKSSMAI TTRDRDRELL IPVADTAVPA ASLSPKPPSS SSAHHAGRET FFKVIRSWAS KKFMTGCVIL FPIAITFYIT
WWFIHFVDGF FSPIYAQLGI DIFGLGFITS ITFIFLVGVF MSSWLGASVL GLGEWFIKRM PLVRHIYNAS KQISAAISPD
QNTQAFKEVA IIRHPRIGEY AFGFITSSVT LQNYSGDEEL YCVYVPTNHL YIGDIFLVNS KDVIRPNLSV REGIEIVVSG
GMSMPQILST VDSRIIPGEI SRINRS*