GBrowse Details

Vigan.11G248200.01

Basic Information:
Name: Vigan.11G248200.01
Multiple alignment
Variant Information
Position: Chr11:37087937..37090040 (- strand)
Length: 2104
Functional Information:
Description: Similar to uncharacterized protein. [C6T072, Glycine max]
GO: Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Thioredoxin-like fold (IPR012336)
Redoxin (IPR013740)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.00,101.55,310.90,308.32,241.66,1594.43,297.38,245.84
Arabidopsis thaliana homolog: AT1G65980.1
Automatic updates:
Name: NM_001248868 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499771 (LOC100499771), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250734 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306620 (LOC100306620), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37087937..37088254 (- strand)
Length: 318
Type: three_prime_UTR
Position: Chr11:37088255..37088508 (- strand)
Length: 254
Type: CDS
Position: Chr11:37089160..37089239 (- strand)
Length: 80
Type: CDS
Position: Chr11:37089714..37089868 (- strand)
Length: 155
Type: CDS
Position: Chr11:37089869..37090040 (- strand)
Length: 172
Type: five_prime_UTR


>Vigan.11G248200.01
ACTCCACACA GCCTCCTCCC TTCTAGAATC TTCCATATTG GCAGTTCTTT CGATGTCTGA TTGACTGATA CACAGCACTG
TTTCTTATAT AGGTTGGATC CAGTTTGTGA AGCAAGAATA GCACAACACA AATTCATAGT ACACCATTTC CATCGTAATC
ATCGTCGTGA ATATGGCTCC AATTGCTGTG GGAGATGCTA TTCCAGACGG CATTCTGGCT TATTTGGATG ATGAAAACAA
ACCCCAATCT GTTTCCATTC ACTCTCTTGC CGCTGGCAAG AAAGTCATCA TCTTTGGTGT TCCCGGTGCC TTCACTCCTA
CATGCAGCTT GAAGCACGTG CCTGGCTTCA TCGAGAGAGC AGAAGAGCTG AAAGGAAAGG GTGTGGATGA AATCATCTGT
ATCAGTGTGA ATGACCCCTT TGTGATGAAC TCATGGGCGA AAACTTTCCC AGAGAACAAG CATGTGAAGT TTCTTGCAGA
TGGTGCTGCG AAATACACCA ATGCACTTGG GCTTGAGCTT GACCTGACAG AGAAGGGGCT TGGTGTTAGG TCTAGGAGGT
TTGCTCTGCT GGTGGAAGAC CTGAAGGTGA AGGTTGCCAA TGTTGAAAAT GCAGGAGAGT TCACTGTCTC CAGTGCTGAA
GATATCATCA AGGCTCTTTA AACCCTTCAG TTGTGGCTTA GGAACCTTTG TTCTTTCATG TTCCTGTGAC TCTTTTGATG
CCAAAACTTT TAGTACAAAC ATTTTCATAG ATGTAATTGT GTTGTGTGCT TTTACAAGGG CATGATGTGG TGCATGCTAT
GGAAATAAAT AAACTTTTTA GCTTCAAGTG TTTTGGGGTG TTGGTGTTTA AAAACAACTC ACATCAGTAT CATGTTTCAC
TTCTTTCTGC CATTCATTAC TCAGTCTACT ATTTGCTGTT TTCTGGTGAA AAAAACAGTG TAAGTGGGAT ATGAAAACAA
TTAAGAGTGA TTCTTCCTA

>Vigan.11G248200.01
ATGGCTCCAA TTGCTGTGGG AGATGCTATT CCAGACGGCA TTCTGGCTTA TTTGGATGAT GAAAACAAAC CCCAATCTGT
TTCCATTCAC TCTCTTGCCG CTGGCAAGAA AGTCATCATC TTTGGTGTTC CCGGTGCCTT CACTCCTACA TGCAGCTTGA
AGCACGTGCC TGGCTTCATC GAGAGAGCAG AAGAGCTGAA AGGAAAGGGT GTGGATGAAA TCATCTGTAT CAGTGTGAAT
GACCCCTTTG TGATGAACTC ATGGGCGAAA ACTTTCCCAG AGAACAAGCA TGTGAAGTTT CTTGCAGATG GTGCTGCGAA
ATACACCAAT GCACTTGGGC TTGAGCTTGA CCTGACAGAG AAGGGGCTTG GTGTTAGGTC TAGGAGGTTT GCTCTGCTGG
TGGAAGACCT GAAGGTGAAG GTTGCCAATG TTGAAAATGC AGGAGAGTTC ACTGTCTCCA GTGCTGAAGA TATCATCAAG
GCTCTTTAA

>Vigan.11G248200.01
MAPIAVGDAI PDGILAYLDD ENKPQSVSIH SLAAGKKVII FGVPGAFTPT CSLKHVPGFI ERAEELKGKG VDEIICISVN
DPFVMNSWAK TFPENKHVKF LADGAAKYTN ALGLELDLTE KGLGVRSRRF ALLVEDLKVK VANVENAGEF TVSSAEDIIK
AL*