GBrowse Details

Vigan.11G248300.01

Basic Information:
Name: Vigan.11G248300.01
Multiple alignment
Variant Information
Position: Chr11:37090995..37093456 (+ strand)
Length: 2462
Functional Information:
Description: Similar to DNA-directed RNA polymerases I, II, and III subunit RPABC1-like. [XP_004511328.1, Cicer arietinum]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
InterPro: RNA polymerase, subunit H/Rpb5 C-terminal (IPR000783)
RNA polymerase, Rpb5, N-terminal (IPR005571)
DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus (IPR014381)
RNA polymerase, subunit H/Rpb5, conserved site (IPR020608)
Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit (IPR020609)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:95.40,68.95,26.01,25.01,27.18,22.23,31.57,26.21
Arabidopsis thaliana homolog: AT3G22320.1
Automatic updates:
Name: NM_001250568 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306098 (LOC100306098), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251115 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499667 (LOC100499667), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37090995..37091091 (+ strand)
Length: 97
Type: five_prime_UTR
Position: Chr11:37091092..37091472 (+ strand)
Length: 381
Type: CDS
Position: Chr11:37091915..37092028 (+ strand)
Length: 114
Type: CDS
Position: Chr11:37092699..37092824 (+ strand)
Length: 126
Type: CDS
Position: Chr11:37092825..37093456 (+ strand)
Length: 632
Type: three_prime_UTR


>Vigan.11G248300.01
CGCGTATTCA CCTTCATTTA AAAGAGCAAA CTTTAGGGCA AACGAAGAAA GGTAACTTCG AAGAAGAGAA TTTGGGAGCA
AAAGCGAAGT GAAGGAGATG GTGCTTCCTG ATGAAGAAAT TTCGAGGCTC TTCCGAATCA GGAAGACGGT GATGCAGATG
CTGAGGGACA GAGGCTTCCT GGTGGGGGAC TTCGAGATCA ACATGTCCAA GCACGAGTTC AAATCCAAGT ACGGCGAGCA
CATGAAACGT GAGGACCTCG TCATCAACAA GTCCAAGAAG GACAACTCCG GCGACCAGAT CTACGTCTTC TTCCCGGAGG
AGGCCAAGGT CGGCGTCAAA ACCATGAAGA CTTACACTAA CCGCATGAAC TCCGAAAACG TCTACAGAGC CATTCTCGTC
ACTCAGACCA ACCTTACCCC CTTCGCCAGA ACCTGCATCA GCGAAATCTC TTCCAAATTT CACTTGGAGG TTTTTCAGGA
GGCGGAGCTG CTGGTGAATA TTAAAGAGCA TGAACTTGTC CCTGAACATC AGGTTCTCAC TGATGCTGAG AAGAAAACCT
TGATTGAGAG ATACACTGTG AAAGAAACTC AGCTACCTAG GATTCAGGTG ACAGATCCTG TAGCAAGATA TTATGGATTG
AAACGTGGTC AAGTTGTGAA GATTATTCGG CCGAGTGAAA CTGCTGGAAG ATATGTTACA TATAGATTTG TTGTATAAGA
ATGTTATAAC TTATTGACTA CATTACTTTT TAGGATATGT TGCATAGTAA TGGACAGGGA TGTGAAGCTT GTGGAATCAA
AGTCCCATTT TTATATCGAA ATTGATTGAT GCTGTTATGA ACAGTCGTGA GTGTGTTATA TGGAGCTCTG TTTCTTTCCG
TAATGTACCA ATAATTTCTT TTGGTAATTC GGACGAGAGC AAGGGGAGGT TCATATATTT TGTCATTTCT GGAATGTTGT
CTTCCTGAAG TTGGTTGCTT GTTCCTATTT CCCAATTGTC TATTTAGGTT GTTGATGTTG ACTTAGATGC AAATCAAGGG
ATAGAGATGT GCATTTAGAG TTTCCTGCAC TCCTTTCTCT GAACCTCGAC GATACTCTTT CTCTCTTGCT TCTTTTCTCT
CTTGCTTCTT TTCTCTCTCT CTGTTTGGCT CTCTCATTCT CCTTATTTCA TCTCTAATCA ATCCAATGTT TGATGAGAAG
CGTGGTGTTT CAGTTTTGAT TTGTTTGTCT TGATTCTGCA TTTCTGTGAA CAAATTTAGT TGAAATTGTG CTTTTAAGTT
TGTTGCTTTA ATTACTGATG ATCAATTCTT AGTCAAATCC TCTTCTCACA ATAATTGAAA GAACTTTTCT 

>Vigan.11G248300.01
ATGGTGCTTC CTGATGAAGA AATTTCGAGG CTCTTCCGAA TCAGGAAGAC GGTGATGCAG ATGCTGAGGG ACAGAGGCTT
CCTGGTGGGG GACTTCGAGA TCAACATGTC CAAGCACGAG TTCAAATCCA AGTACGGCGA GCACATGAAA CGTGAGGACC
TCGTCATCAA CAAGTCCAAG AAGGACAACT CCGGCGACCA GATCTACGTC TTCTTCCCGG AGGAGGCCAA GGTCGGCGTC
AAAACCATGA AGACTTACAC TAACCGCATG AACTCCGAAA ACGTCTACAG AGCCATTCTC GTCACTCAGA CCAACCTTAC
CCCCTTCGCC AGAACCTGCA TCAGCGAAAT CTCTTCCAAA TTTCACTTGG AGGTTTTTCA GGAGGCGGAG CTGCTGGTGA
ATATTAAAGA GCATGAACTT GTCCCTGAAC ATCAGGTTCT CACTGATGCT GAGAAGAAAA CCTTGATTGA GAGATACACT
GTGAAAGAAA CTCAGCTACC TAGGATTCAG GTGACAGATC CTGTAGCAAG ATATTATGGA TTGAAACGTG GTCAAGTTGT
GAAGATTATT CGGCCGAGTG AAACTGCTGG AAGATATGTT ACATATAGAT TTGTTGTATA A

>Vigan.11G248300.01
MVLPDEEISR LFRIRKTVMQ MLRDRGFLVG DFEINMSKHE FKSKYGEHMK REDLVINKSK KDNSGDQIYV FFPEEAKVGV
KTMKTYTNRM NSENVYRAIL VTQTNLTPFA RTCISEISSK FHLEVFQEAE LLVNIKEHEL VPEHQVLTDA EKKTLIERYT
VKETQLPRIQ VTDPVARYYG LKRGQVVKII RPSETAGRYV TYRFVV*