GBrowse Details

Vigan.11G252700.01

Basic Information:
Name: Vigan.11G252700.01
Multiple alignment
Variant Information
Position: Chr11:37507961..37510363 (+ strand)
Length: 2403
Functional Information:
Description: Similar to Uncharacterized protein. [I1J4J0, Glycine max]
GO: Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome b5-like heme/steroid binding domain (IPR001199)
Cytochrome b5, heme-binding site (IPR018506)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.49,8.49,2.83,27.94,6.56,7.09,5.99
Arabidopsis thaliana homolog: AT1G60660.1
Automatic updates:
Name: NM_001251021 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527821 (LOC100527821), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37507961..37508275 (+ strand)
Length: 315
Type: five_prime_UTR
Position: Chr11:37508276..37508357 (+ strand)
Length: 82
Type: CDS
Position: Chr11:37508469..37508509 (+ strand)
Length: 41
Type: CDS
Position: Chr11:37508997..37509074 (+ strand)
Length: 78
Type: CDS
Position: Chr11:37509390..37509481 (+ strand)
Length: 92
Type: CDS
Position: Chr11:37509933..37509999 (+ strand)
Length: 67
Type: CDS
Position: Chr11:37510000..37510363 (+ strand)
Length: 364
Type: three_prime_UTR


>Vigan.11G252700.01
TTTTTTTCTG TGAGCTTGTG AGACTGTGTT ACTTTATTGT CTTCACTCGC AGCTTGTTCA TCATTGGTGA GTGCTGACAT
TAACATTTTT GCCTGCGTTT TGTTTTTTGT TCCTGTGCAA TGCTTTCAAC TTCTCATTGG TGAGTTCAGA TTGTGCCATG
ATTCTGTTTT TTTTGTTTCC CTCTCTCTCT TCTGAAAGTG CTTGTGAGTA TTTATGAACA CGAAGAGTGC CCAATATGTT
TGCATTATCG CATGCCCTTT TCTTGTTTTC GCCATTTCAG ATTGGATTAA GAGGCAAAGT TTCCGACTTT GAATTATGGT
ATTGCTGGTT GCACTTGCAT TGCTTCTGGG TCTCTTCCTC GCTGTTCTTC TTTTCAACCC ACGACACCGC AAATCTGGGC
ACAAGGGAAA AGCTCAAACC AGTTTAAACA ATGATAAGAC ATCAAAATCC TACAGTAAAA CGGAAGTTTC ATTGCATAAC
AAGAGAACAG ATTGTTGGAT AATCATCAAG AAAAAGGTAT ATGATGTTAC CTCTTATGTG GAAGAACATC CAGGTGGTGA
TGCCATTCTA GCACATGCTG GAGATGATTC AACTGAAGGA TTTTTTGGAC CACAGCATGC AACTCGAGTC TTTGACATGA
TTGAAGACTT CTACATTGGA GATTTGGAAC AATAGCCTAG TCAGTAACTC TACAGTTTTA ATGTTCAAGA GATGTATGAT
TTGAGAATTT CAACATTTTA CTCCTTGTTA TCTCCTCAAA TTTTCACTCC TTGTCTGATC ATTCATCTTC ATTAGACAGT
AATTCAGTTG TTGCTGTTGG AATGCATGAT TTTGATATAA TTGGGCATGA AATCATTTGT ATTCTCTGGC CTTTGTGCGC
GCAGTAACAG CAAAAACTGA GCCTTCCCCT TCTTTTCATC ATTATTTTAT CTTAGTTTCT TACCTTTAGC AATTTCCTTT
TCCCTGATTT ACATTATTCA TAGTTTATTG ATATAAACAA ATCTCATCAT ACAAAAATAT TAAGCTAAAT TAAAATATT

>Vigan.11G252700.01
ATGGTATTGC TGGTTGCACT TGCATTGCTT CTGGGTCTCT TCCTCGCTGT TCTTCTTTTC AACCCACGAC ACCGCAAATC
TGGGCACAAG GGAAAAGCTC AAACCAGTTT AAACAATGAT AAGACATCAA AATCCTACAG TAAAACGGAA GTTTCATTGC
ATAACAAGAG AACAGATTGT TGGATAATCA TCAAGAAAAA GGTATATGAT GTTACCTCTT ATGTGGAAGA ACATCCAGGT
GGTGATGCCA TTCTAGCACA TGCTGGAGAT GATTCAACTG AAGGATTTTT TGGACCACAG CATGCAACTC GAGTCTTTGA
CATGATTGAA GACTTCTACA TTGGAGATTT GGAACAATAG 

>Vigan.11G252700.01
MVLLVALALL LGLFLAVLLF NPRHRKSGHK GKAQTSLNND KTSKSYSKTE VSLHNKRTDC WIIIKKKVYD VTSYVEEHPG
GDAILAHAGD DSTEGFFGPQ HATRVFDMIE DFYIGDLEQ*