GBrowse Details

Vigan.11G255800.01

Basic Information:
Name: Vigan.11G255800.01
Multiple alignment
Variant Information
Position: Chr11:37760542..37762703 (+ strand)
Length: 2162
Functional Information:
Description: Similar to Uncharacterized protein. [C6SXR3, Glycine max]
GO: Biological Process: transport (GO:0006810)
Biological Process: protein transport (GO:0015031)
Molecular Function: protein transporter activity (GO:0008565)
InterPro: Longin-like domain (IPR011012)
Adaptor protein complex, sigma subunit (IPR016635)
AP complex, mu/sigma subunit (IPR022775)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.02,6.91,16.62,17.65,24.70,22.74,30.05,22.61
Arabidopsis thaliana homolog: AT2G19790.1
Automatic updates:
Name: NM_001249806 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306047 (LOC100306047), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:37760542..37760592 (+ strand)
Length: 51
Type: five_prime_UTR
Position: Chr11:37760593..37760733 (+ strand)
Length: 141
Type: CDS
Position: Chr11:37760878..37760964 (+ strand)
Length: 87
Type: CDS
Position: Chr11:37761853..37761921 (+ strand)
Length: 69
Type: CDS
Position: Chr11:37762008..37762142 (+ strand)
Length: 135
Type: CDS
Position: Chr11:37762143..37762703 (+ strand)
Length: 561
Type: three_prime_UTR


>Vigan.11G255800.01
GTGTTGTTTG TTGAGATTTG TAGAGAAAGA TTGAATTAGG GCAGAATCAG AATGGGGATC CGATTCGTGT TGATGGTGAA
CAAGCAAGGC CAAACGCGCC TTGCTCAGTA CTACGAATAC CTCACTCTCG AAGAGCGTCG AGCTCTCGAA GGTGAAATCG
TTCGTAAATG TCTCGCCCGC AACGAACAAC AGTGTTCCTT TGTTGAGCAT CGCAACTACA AAATAGTGTA CAGGCGCTAC
GCCTCCTTGT TTTTCCTCGT TGGAGTCGAC GATGACGAGA ATGAGCTTGC TATTTTGGAA TTTATACACC TCTTGGTTGA
AACAATGGAT CGTCATTTTG GCAATGTGTG CGAGCTAGAT ATTATGTTCC ATTTAGAAAA GGCGCATTTT ATGTTGGAAG
AAATGGTTAT GAATGGTTGT ATTGTGGAGA CAAACAAATC AAATATTCTG ACTCCAATTC AGCTGATGGA TAAAACATCT
TGAAGGAGAA AAAAAGAAAT ATGCCCGGCT TTTGATGTAT GAATATCGTT CTGTGTACAA TAGACAAGAT AATCTATAAT
TTTCAGTATG AAGGAAAATT CGCGTGTAAC TTTCTGTCTT GTTTTTCTCA CACCCCTTGT ATGAATGATT ATGAACTAGT
TTTTTTTTTT TTTTTTTTCA AATGGCATTT GGCATTAGAA AAATACCCTG ATAATGGAAA TTATAAATTT CAAATTAAGA
TTGCACGTTG ACCGTTCCGA CCAGTTGAGG TGTAGTTATG TAACATACGC AATAAATTTT CCAGCCGGAT GTAGGAGTCT
AAAGATTATC TATTTTATTT TAGGGTTAAT TGCATGAACA TGGCTTTCAA ATGGACTTTC CTATAGTTGA ATATGAAAGG
CTCGAGCTAC TAAATGCTAA AGCCATGACA ATCGTTCAGA GTAACATTCT AAAGAGGACA AGCTGCAATG TTTTATAATT
GTATTTTTAA ATAATTAAAA AAGGTTTCGG ATAAATGTAT AGAAAGTGTT CTTATAATTT CACGAATTCT GAAGAGTGAT
GAGA

>Vigan.11G255800.01
ATGGGGATCC GATTCGTGTT GATGGTGAAC AAGCAAGGCC AAACGCGCCT TGCTCAGTAC TACGAATACC TCACTCTCGA
AGAGCGTCGA GCTCTCGAAG GTGAAATCGT TCGTAAATGT CTCGCCCGCA ACGAACAACA GTGTTCCTTT GTTGAGCATC
GCAACTACAA AATAGTGTAC AGGCGCTACG CCTCCTTGTT TTTCCTCGTT GGAGTCGACG ATGACGAGAA TGAGCTTGCT
ATTTTGGAAT TTATACACCT CTTGGTTGAA ACAATGGATC GTCATTTTGG CAATGTGTGC GAGCTAGATA TTATGTTCCA
TTTAGAAAAG GCGCATTTTA TGTTGGAAGA AATGGTTATG AATGGTTGTA TTGTGGAGAC AAACAAATCA AATATTCTGA
CTCCAATTCA GCTGATGGAT AAAACATCTT GA

>Vigan.11G255800.01
MGIRFVLMVN KQGQTRLAQY YEYLTLEERR ALEGEIVRKC LARNEQQCSF VEHRNYKIVY RRYASLFFLV GVDDDENELA
ILEFIHLLVE TMDRHFGNVC ELDIMFHLEK AHFMLEEMVM NGCIVETNKS NILTPIQLMD KTS*