VIGGS:GBrowse

Vigan.11G260000.01

Basic Information:

Name:	Vigan.11G260000.01 Multiple alignment Variant Information
Position:	Chr11:37938263..37940821 (- strand)
Length:	2559

Functional Information:

Description:	Similar to phospholipase A2-alpha-like. [XP_004513106.1, Cicer arietinum]
GO:	Biological Process: phospholipid metabolic process (GO:0006644)
	Biological Process: lipid catabolic process (GO:0016042)
	Molecular Function: phospholipase A2 activity (GO:0004623)
	Molecular Function: calcium ion binding (GO:0005509)
InterPro:	Phospholipase A2 (IPR001211)
	Phospholipase A2, active site (IPR013090)
	Phospholipase A2 domain (IPR016090)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.30,2.77,38.84,14.44,85.50,51.67,49.33,37.09
Arabidopsis thaliana homolog:	AT2G06925.1

Automatic updates:

Name:	NM_001248551 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500260 (LOC100500260), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001254447 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max phospholipase A2 homolog 3-like (LOC100797904), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:37938263..37938550 (- strand)
Length:	288
Type:	three_prime_UTR

Position:	Chr11:37938551..37938726 (- strand)
Length:	176
Type:	CDS

Position:	Chr11:37939894..37940019 (- strand)
Length:	126
Type:	CDS

Position:	Chr11:37940124..37940166 (- strand)
Length:	43
Type:	CDS

Position:	Chr11:37940285..37940413 (- strand)
Length:	129
Type:	CDS

Position:	Chr11:37940414..37940821 (- strand)
Length:	408
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G260000.01
ACAAGATAAG GGTTTGTTTT ATTGTCACTA TTTTAAGATT TTTAATTTGA TGTGTTGACA TTGTAAAAGC TTTTTCTCTG
CAATGTCGTC ATATGCTGAG AGATTTCTGT GTATTGGCTG TGAAAATTGC ATAATGGGAA TGCAAAAAAG TTTGTAATGC
AGCTACAGAA TCATGAATTA AAATAATGCA AACAATATAG TCACGAGACG CTACAAAACA AATCACCTAC CTTCCACTCT
TTCTCTGAGC TGTGGCTGTG GCTCTGGTTG AGACTGTGCC TGCCATGTGT TCGAAACTTT GCTCTCAAAT CTAACACACC
TTTTCATCAT ATAAATCAGA GCCTTTAAAC AACACCAAGT TTCCCAAACT CAAAAGTAAG TTCACTTTTC CCCTTTGTTC
GTCCAAACAT GCTACCAACC TCCTCACTCA AGTATGTTCT TCTCCTCTTT TATTGTACTT TTTCCTTTAA CTTGTTAACC
ACTCCTGGCT GTGCCCTCAA CATAGGAGCT GAAACCACTG GAGTAGCTGT CTCTGTGAGC AAAGAGTGCA GCAAACAATG
TGAGTCAAGT TTCTGCTCAG TGCCTCCATT ATTGAGATAT GGGAAATACT GTGGACTTTT GTATAGTGGA TGCCCTGGTG
AAAAACCTTG TGATGGCCTT GATGCTTGTT GTATGAAGCA TGATCAATGT GTGCAAGCCA AAAACAATGA CTACCTAAGC
CAAGAATGTA GCCAAGCATT GATAAACTGT ATGAATAACT TCAAGAACTC GAAGGCTCCT ACATTCAAAG GAAACACGTG
CAATGTGAAT GATGTTATTG AAGTAATACA TGTTGTGATG GAAGCCGCTT TACTGGCTGG AGGGATTCTC CACAAGCCCT
AGAGAGTAAT GTTGTTTATC TGTCTGTCTG TCTTATCAAG TCTCAGCTAA GAATAGATAT TCTCTCGTTC TTCCTATTGT
TTGTAGTTGC TCTCTTACCA AATTAATCAA GCTTCAATGC TTTATTTTAT TTGTTCACAA CCAATGTACT CTTTTCGCAC
ACTCTTATTA TTTAGGTAAT GTATGTTTAG TCATTCTTGT GATCCCCCAC TTCCGACAAA TGTACACTGC AAACACATTT
TTTGTTCTTC TGTTTTCCTT GTGATGGAAT TAGTTTCGCT TTTTGAAAAA

[show][hide][copy]CDS

>Vigan.11G260000.01
ATGCTACCAA CCTCCTCACT CAAGTATGTT CTTCTCCTCT TTTATTGTAC TTTTTCCTTT AACTTGTTAA CCACTCCTGG
CTGTGCCCTC AACATAGGAG CTGAAACCAC TGGAGTAGCT GTCTCTGTGA GCAAAGAGTG CAGCAAACAA TGTGAGTCAA
GTTTCTGCTC AGTGCCTCCA TTATTGAGAT ATGGGAAATA CTGTGGACTT TTGTATAGTG GATGCCCTGG TGAAAAACCT
TGTGATGGCC TTGATGCTTG TTGTATGAAG CATGATCAAT GTGTGCAAGC CAAAAACAAT GACTACCTAA GCCAAGAATG
TAGCCAAGCA TTGATAAACT GTATGAATAA CTTCAAGAAC TCGAAGGCTC CTACATTCAA AGGAAACACG TGCAATGTGA
ATGATGTTAT TGAAGTAATA CATGTTGTGA TGGAAGCCGC TTTACTGGCT GGAGGGATTC TCCACAAGCC CTAG

[show][hide][copy]PROTEIN

>Vigan.11G260000.01
MLPTSSLKYV LLLFYCTFSF NLLTTPGCAL NIGAETTGVA VSVSKECSKQ CESSFCSVPP LLRYGKYCGL LYSGCPGEKP
CDGLDACCMK HDQCVQAKNN DYLSQECSQA LINCMNNFKN SKAPTFKGNT CNVNDVIEVI HVVMEAALLA GGILHKP*