GBrowse Details

Vigan.11G261700.01

Basic Information:
Name: Vigan.11G261700.01
Multiple alignment
Variant Information
Position: Chr11:38059410..38065448 (- strand)
Length: 6039
Functional Information:
Description: Similar to Uncharacterized protein. [K7N4G4, Glycine max]
GO: Molecular Function: catalytic activity (GO:0003824)
Molecular Function: intramolecular transferase activity (GO:0016866)
InterPro: Prenyltransferase/squalene oxidase (IPR001330)
Terpene synthase, conserved site (IPR002365)
Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930)
Squalene cyclase (IPR018333)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.45,1.23,20.45,0.00,1.20,1.56
Arabidopsis thaliana homolog: AT1G66960.1, AT1G78500.1, AT1G78950.1, AT1G78955.1, AT1G78960.1, AT1G78970.2, AT2G07050.1, AT3G29255.1, AT3G45130.1, AT4G15340.1, AT4G15370.1, AT5G36150.1, AT5G42600.1, AT5G48010.2
Automatic updates:
Name: OP795926 NCBI(nuccore)
Organism: Vigna unguiculata
Description: Vigna unguiculata lupeol synthase (LUS) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:38059410..38059653 (- strand)
Length: 244
Type: three_prime_UTR
Position: Chr11:38059654..38059764 (- strand)
Length: 111
Type: CDS
Position: Chr11:38060140..38060223 (- strand)
Length: 84
Type: CDS
Position: Chr11:38060317..38060397 (- strand)
Length: 81
Type: CDS
Position: Chr11:38060523..38060844 (- strand)
Length: 322
Type: CDS
Position: Chr11:38060917..38060963 (- strand)
Length: 47
Type: CDS
Position: Chr11:38061045..38061200 (- strand)
Length: 156
Type: CDS
Position: Chr11:38061297..38061419 (- strand)
Length: 123
Type: CDS
Position: Chr11:38061581..38061700 (- strand)
Length: 120
Type: CDS
Position: Chr11:38061885..38061998 (- strand)
Length: 114
Type: CDS
Position: Chr11:38062066..38062254 (- strand)
Length: 189
Type: CDS
Position: Chr11:38062338..38062504 (- strand)
Length: 167
Type: CDS
Position: Chr11:38062591..38062675 (- strand)
Length: 85
Type: CDS
Position: Chr11:38062753..38063226 (- strand)
Length: 474
Type: CDS
Position: Chr11:38065125..38065361 (- strand)
Length: 237
Type: CDS
Position: Chr11:38065362..38065448 (- strand)
Length: 87
Type: five_prime_UTR


>Vigan.11G261700.01
AAATATTGTT TACAATACAA AAAAATTATA TTGTTAGTAT TAATATTATT TTTGAAGTAT TGTGTAACGC GTGTAATATA
TAAATGCATG CATTGGGTGA GTTGGTTGAA AAAGAAAAGA ATTAGTAAGA TGTGGAAGTT GAAGATAGGA GAAGGAGGGA
AGGAACTGAT ATCCGCGAAT AATTTCGTGG GACGTCAACA TTGGGTGTTT GATCCAAACG CCGGAACAGT TGAAGAACGC
GGTGAGGTAG AAAGGCTAAG ACACCAATTC ACACTAAACC GACATTCCAT CAAACAAAGC GCAGATCTCT TCCTCAGAAT
GCAGCTGAGA AAAGAGAATG AATGTGGGGT GATTCCAGCG GCAGTGAAGG TAAGAGATAG AGAAAATGTT ACGATGGAAG
CGTTGATTAC TACAATCAGA AGAGGCATCG GTTTCTATTC ATCCATTCAA GGCAGTGATG GGCACTGGCC TGCAGAATCA
GCTGGGCCTT TGTTTTTCCT TCAACCTTTG GTGATGGCAT TATACATCAC AGGATCCCTT GATGTTGTTT TAGGAGCCGA
ACACAAGAAG GAAATAGTGA GATATTTGTA TAATCATCAG AACGAAGATG GGGGTTGGGG ATTCCATATA GAGGGTGATA
GTACAATGTT TGGATCAGCA CTGAGCTACA TTGCGTTGAG GATACTTGGT GAAGGGGTTG AAGATGGTGT GGAGCGGGCA
ATGTACAGAG GAAGAAAATG GATCCTGGAG CATGGTGGTT TAGTGGCTAT TCCTTCATGG GGAAAGTTCT GGGTCACGGT
ACTGGGTGTC TATGAATGGT GTGGCTGTAA TCCACTTCCA CCGGAGTTTT GGCTTCTACC CAAAGCCATC CCCATTCATC
CAGGGAAAAT GCTGTGCTAC TGTCGCTTGG TTTACATGCC CATGTCATAC TTATATGGGA AGAGGTTCAT AGGTCCCATC
ACTGCCTTAA TCAGATCACT CAGAGAAGAA ATGTATAATG AGCCTTATGA AGCAATCAAT TGGAATAAAG CCCGCAACAC
TGTTGCTAAG GAGGATCTGT ACTATCCACA TCCTGTGATC CAAGACATGT TATGGGGATT TCTTCATCAC GTGGGAGAGC
GTTTCCTGAA TTGCTGGCCC TTTTCCATGC TCAGACAGAA GGCATTACAA ATAGCAATTG AGCATGTACG TTACGAGGAT
GAGAACAGTA GATACCTTTG CATTGGAAGT GTAGAGAAGG TTCTGTGCTT GCTTGCGCGT TGGGTTGAGG ACCCTAATTC
AGAGGCATAC AAACTTCATT TAGCCCGAAT CCCTGATTAC TTCTGGCTCG CAGAAGACGG CTTGAAAATC CAGAGTTTTG
GGAGCCAAAT GTGGGATGCT GCATTTGCTA TTCAAGCAAT ACTTAGTTGT GATGTGAGTG AAGAGTACGG GCCTACACTT
CGTAAAGCAC ACGACTTCGT GAAGGCTTCA CAAGTGAGTG AAAACCCATC TGGTGACTTC AAAGCAATGT ACAGACACGT
ATCGAAAGGA AGCTGGACAT TTTCAATGCA TGATCAAGGT TGGCAAGTCT CCGACTGCAC CGCAGAAGGA CTCAAGGCTG
CACTCCTTCT GTCAGAAATG CCAACTGATC TAGTTGGGGA CCAAATGGAA ACACAGCGAT TTTTTGATGC TGTTAATGTC
ATCCTCTCTC TACAGAGCAG TAATGGCGGT TTCCCTGCAT GGGAACCTCA AAGAGCCTAT CGTTGGTTAG AGAAATTCAA
CCCAACTGAA TTCTTTGAAG ACACTCTGAT TGAGACGGAG TATGTGGAAT GCAGTGGATC AGCAGTGCAG GGCCTGGCTC
TCTTCAGAAA GCTATACCCA AAGCACAGGA GAAGGGAAAT AGATAGCAGT ATTTCGAAAG CAATCGATTT CATTGAAAGG
AAGCAAAATC CTGATGGGTC GTGGTACGGT TGTTGGGGTA TTTGCTATAC ATATGGTACC TGGTTCGCTG TAGAGGGACT
AAGAGCCTAT GGAAAGAACT ACCATAACAG CCCTTCCCTA CGCAAGGCTT GTCAATTTTT GTTGTCAAAG CAGCTTTCTA
ATGGTGGATG GGGAGAGAGT TATTTGTCCA GCCAAAACAA GGTTTATACA AACATAGAAG GCAACCGTGC AAACTTAGTT
CAAACTTCGT GGGCTCTGTT GTCCCTTATA CATGCAGGAC AGGCTGAGAT AGATCCGACA CCCATACATC GTGGAATAAA
GTTACTTGTC AATTCACAAA TGGAAGATGG AGATTTCCCA CAGCAGGAGA TAACGGGAGT ATTCATGAGG AACTGTACCC
TGAACTACTC ATCTTATCGA AACATCTTTC CCATATGGGC TTTGGGAGAG TATCGTCGCC AAGTATTGCG GGGTTAAGGT
TGAGGACCCA AAACCTTAAC TCAACTTGGT AATTGCTTTT CCACTACGCA TCAATCAACT CCTACATGTG TAATATAATT
TACATTTCAA AGGATTATGT GCAGCTTGCC TGCACAATAT AAAATAAATA CTTGAGCATG TGATTGTAAT ATTCAATTAG
TCTTTCCAGA ATAACCCTGT CTGTAACACT AAATTTCAAG TTAATTTCCT TCTTATTAAA CAAATGCATT CATCTCTTTC
A

>Vigan.11G261700.01
ATGCATTGGG TGAGTTGGTT GAAAAAGAAA AGAATTAGTA AGATGTGGAA GTTGAAGATA GGAGAAGGAG GGAAGGAACT
GATATCCGCG AATAATTTCG TGGGACGTCA ACATTGGGTG TTTGATCCAA ACGCCGGAAC AGTTGAAGAA CGCGGTGAGG
TAGAAAGGCT AAGACACCAA TTCACACTAA ACCGACATTC CATCAAACAA AGCGCAGATC TCTTCCTCAG AATGCAGCTG
AGAAAAGAGA ATGAATGTGG GGTGATTCCA GCGGCAGTGA AGGTAAGAGA TAGAGAAAAT GTTACGATGG AAGCGTTGAT
TACTACAATC AGAAGAGGCA TCGGTTTCTA TTCATCCATT CAAGGCAGTG ATGGGCACTG GCCTGCAGAA TCAGCTGGGC
CTTTGTTTTT CCTTCAACCT TTGGTGATGG CATTATACAT CACAGGATCC CTTGATGTTG TTTTAGGAGC CGAACACAAG
AAGGAAATAG TGAGATATTT GTATAATCAT CAGAACGAAG ATGGGGGTTG GGGATTCCAT ATAGAGGGTG ATAGTACAAT
GTTTGGATCA GCACTGAGCT ACATTGCGTT GAGGATACTT GGTGAAGGGG TTGAAGATGG TGTGGAGCGG GCAATGTACA
GAGGAAGAAA ATGGATCCTG GAGCATGGTG GTTTAGTGGC TATTCCTTCA TGGGGAAAGT TCTGGGTCAC GGTACTGGGT
GTCTATGAAT GGTGTGGCTG TAATCCACTT CCACCGGAGT TTTGGCTTCT ACCCAAAGCC ATCCCCATTC ATCCAGGGAA
AATGCTGTGC TACTGTCGCT TGGTTTACAT GCCCATGTCA TACTTATATG GGAAGAGGTT CATAGGTCCC ATCACTGCCT
TAATCAGATC ACTCAGAGAA GAAATGTATA ATGAGCCTTA TGAAGCAATC AATTGGAATA AAGCCCGCAA CACTGTTGCT
AAGGAGGATC TGTACTATCC ACATCCTGTG ATCCAAGACA TGTTATGGGG ATTTCTTCAT CACGTGGGAG AGCGTTTCCT
GAATTGCTGG CCCTTTTCCA TGCTCAGACA GAAGGCATTA CAAATAGCAA TTGAGCATGT ACGTTACGAG GATGAGAACA
GTAGATACCT TTGCATTGGA AGTGTAGAGA AGGTTCTGTG CTTGCTTGCG CGTTGGGTTG AGGACCCTAA TTCAGAGGCA
TACAAACTTC ATTTAGCCCG AATCCCTGAT TACTTCTGGC TCGCAGAAGA CGGCTTGAAA ATCCAGAGTT TTGGGAGCCA
AATGTGGGAT GCTGCATTTG CTATTCAAGC AATACTTAGT TGTGATGTGA GTGAAGAGTA CGGGCCTACA CTTCGTAAAG
CACACGACTT CGTGAAGGCT TCACAAGTGA GTGAAAACCC ATCTGGTGAC TTCAAAGCAA TGTACAGACA CGTATCGAAA
GGAAGCTGGA CATTTTCAAT GCATGATCAA GGTTGGCAAG TCTCCGACTG CACCGCAGAA GGACTCAAGG CTGCACTCCT
TCTGTCAGAA ATGCCAACTG ATCTAGTTGG GGACCAAATG GAAACACAGC GATTTTTTGA TGCTGTTAAT GTCATCCTCT
CTCTACAGAG CAGTAATGGC GGTTTCCCTG CATGGGAACC TCAAAGAGCC TATCGTTGGT TAGAGAAATT CAACCCAACT
GAATTCTTTG AAGACACTCT GATTGAGACG GAGTATGTGG AATGCAGTGG ATCAGCAGTG CAGGGCCTGG CTCTCTTCAG
AAAGCTATAC CCAAAGCACA GGAGAAGGGA AATAGATAGC AGTATTTCGA AAGCAATCGA TTTCATTGAA AGGAAGCAAA
ATCCTGATGG GTCGTGGTAC GGTTGTTGGG GTATTTGCTA TACATATGGT ACCTGGTTCG CTGTAGAGGG ACTAAGAGCC
TATGGAAAGA ACTACCATAA CAGCCCTTCC CTACGCAAGG CTTGTCAATT TTTGTTGTCA AAGCAGCTTT CTAATGGTGG
ATGGGGAGAG AGTTATTTGT CCAGCCAAAA CAAGGTTTAT ACAAACATAG AAGGCAACCG TGCAAACTTA GTTCAAACTT
CGTGGGCTCT GTTGTCCCTT ATACATGCAG GACAGGCTGA GATAGATCCG ACACCCATAC ATCGTGGAAT AAAGTTACTT
GTCAATTCAC AAATGGAAGA TGGAGATTTC CCACAGCAGG AGATAACGGG AGTATTCATG AGGAACTGTA CCCTGAACTA
CTCATCTTAT CGAAACATCT TTCCCATATG GGCTTTGGGA GAGTATCGTC GCCAAGTATT GCGGGGTTAA 

>Vigan.11G261700.01
MHWVSWLKKK RISKMWKLKI GEGGKELISA NNFVGRQHWV FDPNAGTVEE RGEVERLRHQ FTLNRHSIKQ SADLFLRMQL
RKENECGVIP AAVKVRDREN VTMEALITTI RRGIGFYSSI QGSDGHWPAE SAGPLFFLQP LVMALYITGS LDVVLGAEHK
KEIVRYLYNH QNEDGGWGFH IEGDSTMFGS ALSYIALRIL GEGVEDGVER AMYRGRKWIL EHGGLVAIPS WGKFWVTVLG
VYEWCGCNPL PPEFWLLPKA IPIHPGKMLC YCRLVYMPMS YLYGKRFIGP ITALIRSLRE EMYNEPYEAI NWNKARNTVA
KEDLYYPHPV IQDMLWGFLH HVGERFLNCW PFSMLRQKAL QIAIEHVRYE DENSRYLCIG SVEKVLCLLA RWVEDPNSEA
YKLHLARIPD YFWLAEDGLK IQSFGSQMWD AAFAIQAILS CDVSEEYGPT LRKAHDFVKA SQVSENPSGD FKAMYRHVSK
GSWTFSMHDQ GWQVSDCTAE GLKAALLLSE MPTDLVGDQM ETQRFFDAVN VILSLQSSNG GFPAWEPQRA YRWLEKFNPT
EFFEDTLIET EYVECSGSAV QGLALFRKLY PKHRRREIDS SISKAIDFIE RKQNPDGSWY GCWGICYTYG TWFAVEGLRA
YGKNYHNSPS LRKACQFLLS KQLSNGGWGE SYLSSQNKVY TNIEGNRANL VQTSWALLSL IHAGQAEIDP TPIHRGIKLL
VNSQMEDGDF PQQEITGVFM RNCTLNYSSY RNIFPIWALG EYRRQVLRG*