GBrowse Details

Vigan.UMG006500.01

Basic Information:
Name: Vigan.UMG006500.01
Multiple alignment
Variant Information
Position: Scaffold_0020:209039..211964 (+ strand)
Length: 2926
Functional Information:
Description: Similar to Uncharacterized protein. [I1JXR6, Glycine max]
InterPro: CRAL-TRIO domain (IPR001251)
CRAL/TRIO, N-terminal domain (IPR011074)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:76.13,112.26,29.45,64.11,9.13,18.96,8.24,30.95
Arabidopsis thaliana homolog: AT1G01630.1
Automatic updates:
Name: NM_001254544 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max random slug protein 5-like (LOC100797666), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Scaffold_0020:209039..209259 (+ strand)
Length: 221
Type: five_prime_UTR
Position: Scaffold_0020:209260..209421 (+ strand)
Length: 162
Type: CDS
Position: Scaffold_0020:209894..210152 (+ strand)
Length: 259
Type: CDS
Position: Scaffold_0020:210232..210268 (+ strand)
Length: 37
Type: CDS
Position: Scaffold_0020:210964..211069 (+ strand)
Length: 106
Type: CDS
Position: Scaffold_0020:211193..211303 (+ strand)
Length: 111
Type: CDS
Position: Scaffold_0020:211387..211503 (+ strand)
Length: 117
Type: CDS
Position: Scaffold_0020:211504..211964 (+ strand)
Length: 461
Type: three_prime_UTR


>Vigan.UMG006500.01
GAAAACTTTC CTCAATAAAG TGGCATTTGA ATGAAAACCC GGGTAGTTGA ACATTCAACA ACTGCTGTCA ATACTAACCA
CTCAAATCCC CAGAAGAAGT TTCGCATTTA AGAAGGAGAA AAAATGAGAC AGCTTTTCTT GCCTCCGTGT TCTTGTGAGT
GAGAACACCA GACACAAATT CGTGTCGGTG AGGAAAAGTG TTGAGGCAGA TATTCAAGGG AATGGAGAGT GTCGTGAGCC
CTGAACCATC ACAGAAGTCA CCCTTGGATT CCAGTTCCAA ACAAGTCACA ACCATTGAAG AACTGAAAGA CAGCACTGAT
GCCGAACTCA CCAAAATTGG TCTCATGAGG GCCTTTGTTG AAGCCCGAGA TCCCTTTTCC AAGGAAGTGG ATGATTTGAC
GATTAGAAGA TTCTTGCGGG CTCGTAATTT AGATGTGGAA AAGGCTTCGG CAATGTTCCT GAAGTATTTG AAGTGGAAAC
GTTCGATTAT GCCAAATGGT TATATATCAC CGTCAGAGAT TGCCGAAGAT ATTGCACAAG AGAAGGTGTT TGTGCAAGGG
CTCGACAAGA AGGGTCGACC TATAGTTGTT GCCTTTGCTG CAAAACATTT TCAAAGCAAA AATGGTGCCG ATGGATTTAA
ACGTTATGTA GCCTTTACTC TCGAGAAGCT ATGTTCAAGG ATGCCACCGG GGCAAGAAAA GTTTCTTAGC ATTGCAGACA
TTGAAGGATG GGGATATGCA AACAGTGACC TTCGTGGATA CCTTAATGCT CTATCCACTT TGCAGGATTG CTACCCTGAA
AGATTAGGAA AGATGTTTAT TGTACACGCA CCATATTTGT TTATGAAAAT TTGGAAAATG ATTTACCCTT TCATTGATGA
CAACACTAAG AAAAAGATAG TATTCGTGGA GAACAAAAAG CTGAAATCAA CATTGCTAGA AGAGATAGAA GAGAGTCAAC
TCCCAGATAT ATACGGAGGC CAAATGGCGT TAGTTCCTAT TCAGGATAGC TGATTAGATT ATACTTTTTA AGGATGGTTT
GTCAACTTAA TCTCTCCAAA TAATTTCATC TATGTAGCAC AAGTAAAATA CATATTATAG TCCTCTAGTT CATCACATAG
CGTACGCATA TAATCTGTAA TATGTAATGT GCATGCTTAG TGAGGCTTAT AACAGGCTAT TTTACAAGAA CTTGTTCTTT
GAATGCTATA ATCTCTGCAT CAATTTATCG CAAGGTATCT CTGCAAGAAT AAATCACAGT TATTAGTGAC AAAATTCATA
CATATGTATG GTTTGTTTTT TTGGTCCAAT CATATTGAGT TGGAACCTAG TTGGCTACAT TCATGCTTAT GATACACCGT
GTAGTCTACA GCGAAGAATT TTTACTCTAT TAGTGATTCC AAGCTCTATC CCATAATTTT GAGCCACTCT TGAATATGGC
TGTAAATTTT CTCCCATTTG TTGAGCAACC AAGA

>Vigan.UMG006500.01
ATGGAGAGTG TCGTGAGCCC TGAACCATCA CAGAAGTCAC CCTTGGATTC CAGTTCCAAA CAAGTCACAA CCATTGAAGA
ACTGAAAGAC AGCACTGATG CCGAACTCAC CAAAATTGGT CTCATGAGGG CCTTTGTTGA AGCCCGAGAT CCCTTTTCCA
AGGAAGTGGA TGATTTGACG ATTAGAAGAT TCTTGCGGGC TCGTAATTTA GATGTGGAAA AGGCTTCGGC AATGTTCCTG
AAGTATTTGA AGTGGAAACG TTCGATTATG CCAAATGGTT ATATATCACC GTCAGAGATT GCCGAAGATA TTGCACAAGA
GAAGGTGTTT GTGCAAGGGC TCGACAAGAA GGGTCGACCT ATAGTTGTTG CCTTTGCTGC AAAACATTTT CAAAGCAAAA
ATGGTGCCGA TGGATTTAAA CGTTATGTAG CCTTTACTCT CGAGAAGCTA TGTTCAAGGA TGCCACCGGG GCAAGAAAAG
TTTCTTAGCA TTGCAGACAT TGAAGGATGG GGATATGCAA ACAGTGACCT TCGTGGATAC CTTAATGCTC TATCCACTTT
GCAGGATTGC TACCCTGAAA GATTAGGAAA GATGTTTATT GTACACGCAC CATATTTGTT TATGAAAATT TGGAAAATGA
TTTACCCTTT CATTGATGAC AACACTAAGA AAAAGATAGT ATTCGTGGAG AACAAAAAGC TGAAATCAAC ATTGCTAGAA
GAGATAGAAG AGAGTCAACT CCCAGATATA TACGGAGGCC AAATGGCGTT AGTTCCTATT CAGGATAGCT GA

>Vigan.UMG006500.01
MESVVSPEPS QKSPLDSSSK QVTTIEELKD STDAELTKIG LMRAFVEARD PFSKEVDDLT IRRFLRARNL DVEKASAMFL
KYLKWKRSIM PNGYISPSEI AEDIAQEKVF VQGLDKKGRP IVVAFAAKHF QSKNGADGFK RYVAFTLEKL CSRMPPGQEK
FLSIADIEGW GYANSDLRGY LNALSTLQDC YPERLGKMFI VHAPYLFMKI WKMIYPFIDD NTKKKIVFVE NKKLKSTLLE
EIEESQLPDI YGGQMALVPI QDS*