VIGGS:GBrowse

Vigan.UMG010600.01

Basic Information:

Name:	Vigan.UMG010600.01 Multiple alignment Variant Information
Position:	Scaffold_0032:49161..51239 (- strand)
Length:	2079

Functional Information:

Description:	Similar to Uncharacterized protein. [C6TFW8, Glycine max]
InterPro:	SOUL haem-binding protein (IPR006917)
InterPro:	Regulatory factor, effector binding domain (IPR011256)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:38.52,32.49,160.13,230.23,0.60,532.21,17.24,76.83
Arabidopsis thaliana homolog:	AT1G17100.1

Automatic updates:

Name:	BT096512 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-9P4 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249085 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305993 (LOC100305993), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Scaffold_0032:49161..49356 (- strand)
Length:	196
Type:	three_prime_UTR

Position:	Scaffold_0032:49357..49792 (- strand)
Length:	436
Type:	CDS

Position:	Scaffold_0032:50876..51135 (- strand)
Length:	260
Type:	CDS

Position:	Scaffold_0032:51136..51239 (- strand)
Length:	104
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.UMG010600.01
GTGGCTTGTA ATAATCACAG AGAGGGTTTC ATAAAATATA TGGACATTAA GCCATAGAAT TTCACATTTT ATCCTTTGCT
CGTTAGCGTT CTGCAATTTC CGCCATGGCT GCTGCTACCA TCGCATGCAA GGTTTCACTG CTTTTGAGCC TCTTCTCTGT
TTGGTTTGTG TATGTAAGTT CGGATTCTCT TCCGAATGTA GGGGCACTTC CCCCAACATG CCAGCGCATA GAATGTCCCA
GCTATGATCT CATTCAGGTT GGAAATGGCT ACGAAATCCG CCGCTATAAT TCTCCCGTTT GGATTTCCAA CTCCCCCATT
CAAGACATTT CTCTTGTAGA AGCCACAAGA ACCGGCTTCT TGAGGCTATT TGATTATATT CAGGGTAAGA ACAACTACAA
GCAGAAAATT GAGATGACAG CACCTGTGAT CTCTGAAGTA TCACCCAGTG ATGGACCTTT CTGTGAGTCC TCATTTGTTG
TGAGCTTCTA TGTGCCGAAA GAGAACCAAG CAAACCCGCC CCCTGCAAAG GGCCTTCATG TTCAAAGATG GAAGACTGTG
TATGTAGCAG TTAGACAGTT TGGTGGATTT GTCAAAGATT CTGAAGTTGG GGAGCAAGCT GCAGCCTTGA AGGCTAGTAT
TGCTGGAACC AAGTGGGGTG CTGCAGTTGA GAAGAGCAAG AGTGCTAATC ATACTTCTGT TTACACTGTT GCACAGTACA
ATGCCCCTTT TGAATATGAT AACAGGGTGA ATGAGATATG GTTCTTGTTT GACATTGAAG ATGGACAGCA AACCATGTGA
AAATGTATAC CAGACATAAG CTTTCGACAT GAAAGCAATA TGCAGAGTGC AAACTGATGT GTGAGGAGAC CTTGAATGGA
TGAATAAAGT GTTTCACGTT TTGCTAAAAC ACTGTTTTCT GATTGACTTG CTTTTGGGGT TCATCATAGC TATACACTTG
AAACTTTTCA ACATAAAAGC AATATGCAGA GTGGAG

[show][hide][copy]CDS

>Vigan.UMG010600.01
ATGGCTGCTG CTACCATCGC ATGCAAGGTT TCACTGCTTT TGAGCCTCTT CTCTGTTTGG TTTGTGTATG TAAGTTCGGA
TTCTCTTCCG AATGTAGGGG CACTTCCCCC AACATGCCAG CGCATAGAAT GTCCCAGCTA TGATCTCATT CAGGTTGGAA
ATGGCTACGA AATCCGCCGC TATAATTCTC CCGTTTGGAT TTCCAACTCC CCCATTCAAG ACATTTCTCT TGTAGAAGCC
ACAAGAACCG GCTTCTTGAG GCTATTTGAT TATATTCAGG GTAAGAACAA CTACAAGCAG AAAATTGAGA TGACAGCACC
TGTGATCTCT GAAGTATCAC CCAGTGATGG ACCTTTCTGT GAGTCCTCAT TTGTTGTGAG CTTCTATGTG CCGAAAGAGA
ACCAAGCAAA CCCGCCCCCT GCAAAGGGCC TTCATGTTCA AAGATGGAAG ACTGTGTATG TAGCAGTTAG ACAGTTTGGT
GGATTTGTCA AAGATTCTGA AGTTGGGGAG CAAGCTGCAG CCTTGAAGGC TAGTATTGCT GGAACCAAGT GGGGTGCTGC
AGTTGAGAAG AGCAAGAGTG CTAATCATAC TTCTGTTTAC ACTGTTGCAC AGTACAATGC CCCTTTTGAA TATGATAACA
GGGTGAATGA GATATGGTTC TTGTTTGACA TTGAAGATGG ACAGCAAACC ATGTGA

[show][hide][copy]PROTEIN

>Vigan.UMG010600.01
MAAATIACKV SLLLSLFSVW FVYVSSDSLP NVGALPPTCQ RIECPSYDLI QVGNGYEIRR YNSPVWISNS PIQDISLVEA
TRTGFLRLFD YIQGKNNYKQ KIEMTAPVIS EVSPSDGPFC ESSFVVSFYV PKENQANPPP AKGLHVQRWK TVYVAVRQFG
GFVKDSEVGE QAAALKASIA GTKWGAAVEK SKSANHTSVY TVAQYNAPFE YDNRVNEIWF LFDIEDGQQT M*