GBrowse Details

Vigan.UMG068200.01

Basic Information:
Name: Vigan.UMG068200.01
Multiple alignment
Variant Information
Position: Scaffold_0171:36824..38924 (+ strand)
Length: 2101
Functional Information:
Description: Similar to Uncharacterized protein. [M5WJN3, Prunus persica]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Rad60/SUMO-like domain (IPR022617)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:350.03,297.82,92.08,118.35,159.41,195.41,185.32,94.34
Automatic updates:
Name: NM_001248279 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max small ubiquitin-like modifier (LOC100500241), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Scaffold_0171:36824..37021 (+ strand)
Length: 198
Type: five_prime_UTR
Position: Scaffold_0171:37022..37111 (+ strand)
Length: 90
Type: CDS
Position: Scaffold_0171:38321..38470 (+ strand)
Length: 150
Type: CDS
Position: Scaffold_0171:38548..38607 (+ strand)
Length: 60
Type: CDS
Position: Scaffold_0171:38608..38924 (+ strand)
Length: 317
Type: three_prime_UTR


>Vigan.UMG068200.01
TAAGCATTGG GCTTATGGGT CCAAAGGCCC ATCAATCCGA TAGGCCCAGT AATGTCACAT GTTAAGGAAG GAATTTGAAC
GGTCCAAAGG GAATTGTATA AGAAACGTTT TTGCAATCTC AACGTCAAAG AGAGCGTAGA CGCAGCTGTT GTCGGCGGTA
ACCAAAGGAA GAAGAAGAGT TTGTCAGGAG AGTTAAAGAT GTCTGGTGTT GCCAACAACA ACAATAACGA GGAAGACAAG
AAGCCCAGCG AGCAAGGGGC ACACATCAAT CTTAAAGTCA AAGGGCAGGA TGGGAACGAA GTGTTCTTCA GGATCAAGAG
GAGCACTCAA TTGAAAAAAC TTATGAATGC TTATTGTGAC CGACAGTCGG TTGATTTCAA CTCCATTGCT TTTCTCTTTG
ATGGTCGCCG CCTTCGTGCT GAGCAGACTC CTGATGAGTT GGAAATGGAG GATGGTGATG AAATCGATGC CATGCTTCAT
CAGACTGGAG GCTTCTGAAG GGTTTCATCC TTAAGGAATT ATAAGTAGAA TTAGTTTAAC ATAGAGATCT AGGTGAGACA
TAAGATACAT ATTTTATTAT CTCCTATACA GCTTTTGCTG CAGGATCTTC AAGTCATTGT GGTGCTTCTT TTGTCAATAT
CATTGTGGAT GGATTGTTTT ATTTCTGCTT TGTTTATCTT GATTTGCATA CCTTTCAGTG TTTCTTATAT TTTTCCATTT
CTGAAGTTGA GTGCTGTTCC GATGTTCTCA CTTAAAAGTG AATCATACAT CAATAACATG TGAATGGAAT TGCGAGTTAT
AGATTTAGTT TTATC

>Vigan.UMG068200.01
ATGTCTGGTG TTGCCAACAA CAACAATAAC GAGGAAGACA AGAAGCCCAG CGAGCAAGGG GCACACATCA ATCTTAAAGT
CAAAGGGCAG GATGGGAACG AAGTGTTCTT CAGGATCAAG AGGAGCACTC AATTGAAAAA ACTTATGAAT GCTTATTGTG
ACCGACAGTC GGTTGATTTC AACTCCATTG CTTTTCTCTT TGATGGTCGC CGCCTTCGTG CTGAGCAGAC TCCTGATGAG
TTGGAAATGG AGGATGGTGA TGAAATCGAT GCCATGCTTC ATCAGACTGG AGGCTTCTGA 

>Vigan.UMG068200.01
MSGVANNNNN EEDKKPSEQG AHINLKVKGQ DGNEVFFRIK RSTQLKKLMN AYCDRQSVDF NSIAFLFDGR RLRAEQTPDE
LEMEDGDEID AMLHQTGGF*